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Title:Electron cryo-microscopy of the intact (DNA-filled) head of the yersiniophage phiR1-37
Authors:Skurnik M, Hyytiainen H, Happonen LJ, Kiljunen S, Datta N, Mattinen L, Williamson K, Kristo P, Szeliga M, Kalin-Manttari L, Ahola-Iivarinen E, Kalkkinen N, Butcher SJ
Sample:Electron cryo-microscopy of the intact (DNA-filled) head of the yersiniophage phiR1-37
Method:Single particle reconstruction (23.8 angstroms resolution)
Red flagLatest update:2012-10-24
Sample
Sample name: Electron cryo-microscopy of the intact (DNA-filled) head of the yersiniophage phiR1-37
Components:
ID Type Name Exp. MW (MDa) Oligomeric details Recombinant expression Synthetic Organism UniProt identifier GO identifier InterPro identifier Virus identifier Details
1virusYersinia phage phiR1-37Yersinia phage phiR1-37
Experiment
Specimen state: Particle
Specimen preparation:
pHSpecimen conc.DetailsStainingSpecimen support details
mg/mL50 mM Tris pH 7.8, 10 mM MgSO4
Vitrification:
Cryogen nameHumidityTemp.Instr.MethodTime resolvedDetails
ETHANE% KHOMEMADE PLUNGER ms
Imaging:
MicroscopeVoltageIllumination modeImaging modeCsDefocus min.Defocus max.Nominal mag.Calibrated mag.Electron sourceDetectorDetector distanceAstigmatism
FEI TECNAI F20200 kVFLOOD BEAMBRIGHT FIELD2.0 mm500 nm5760 nm62000FIELD EMISSION GUNKodak SO163 film mm

Specimen holderHolder modelTilt min.Tilt max.Energy filterEnergy windowTemp.Temp. min.Temp. max.Beam tiltElectron doseOther detailsDate
Side entry liquid nitrogen-cooled cryo specimen holderGATAN LIQUID NITROGEN°° eV K K K mrad15 e/Å2Low dose conditions07-SEP-2009
Processing
Software:AUTO3DEM
CTF correction:Each micrograph
Number of particles:1028
Imposed symmetry:I
Resolution by author:23.8 Å
Resolution method:FSC at 0.5 cut-off
Scanned images:
Num. imagesSampling sizeOD rangeQuant. bit numberOther detailsScanner
297 μm/pixelZEISS SCAI
Fitting:
PDBProtocolTarget crit.SoftwareB valueFitting spacePDB chainDetails